Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels.
Identifieur interne : 003507 ( Main/Exploration ); précédent : 003506; suivant : 003508Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels.
Auteurs : Evandro Novaes [États-Unis] ; Luis Osorio ; Derek R. Drost ; Brianna L. Miles ; Carolina R D. Boaventura-Novaes ; Catherine Benedict ; Christopher Dervinis ; Qibin Yu ; Robert Sykes ; Mark Davis ; Timothy A. Martin ; Gary F. Peter ; Matias KirstSource :
- The New phytologist [ 1469-8137 ] ; 2009.
Descripteurs français
- KwdFr :
- Azote (pharmacologie), Biomasse (MeSH), Bois (composition chimique), Bois (génétique), Caractère quantitatif héréditaire (MeSH), Clones cellulaires (MeSH), Engrais (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (génétique), Phénotype (MeSH), Populus (croissance et développement), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Pousses de plante (croissance et développement), Reproductibilité des résultats (MeSH), Spectrométrie de masse (MeSH).
- MESH :
- composition chimique : Bois.
- croissance et développement : Populus, Pousses de plante.
- effets des médicaments et des substances chimiques : Populus.
- génétique : Bois, Locus de caractère quantitatif, Populus.
- pharmacologie : Azote.
- Biomasse, Caractère quantitatif héréditaire, Clones cellulaires, Engrais, Liaison génétique, Phénotype, Reproductibilité des résultats, Spectrométrie de masse.
English descriptors
- KwdEn :
- Biomass (MeSH), Clone Cells (MeSH), Fertilizers (MeSH), Genetic Linkage (MeSH), Mass Spectrometry (MeSH), Nitrogen (pharmacology), Phenotype (MeSH), Plant Shoots (growth & development), Populus (drug effects), Populus (genetics), Populus (growth & development), Quantitative Trait Loci (genetics), Quantitative Trait, Heritable (MeSH), Reproducibility of Results (MeSH), Wood (chemistry), Wood (genetics).
- MESH :
- chemical , pharmacology : Nitrogen.
- chemical : Fertilizers.
- chemistry : Wood.
- drug effects : Populus.
- genetics : Populus, Quantitative Trait Loci, Wood.
- growth & development : Plant Shoots, Populus.
- Biomass, Clone Cells, Genetic Linkage, Mass Spectrometry, Phenotype, Quantitative Trait, Heritable, Reproducibility of Results.
Abstract
The genetic control of carbon allocation and partitioning in woody perennial plants is poorly understood despite its importance for carbon sequestration, biofuels and other wood-based industries. It is also unclear how environmental cues, such as nitrogen availability, impact the genes that regulate growth, biomass allocation and wood composition in trees. We phenotyped 396 clonally replicated genotypes of an interspecific pseudo-backcross pedigree of Populus for wood composition and biomass traits in above- and below-ground organs. The loci that regulate growth, carbon allocation and partitioning under two nitrogen conditions were identified, defining the contribution of environmental cues to their genetic control. Sixty-three quantitative trait loci were identified for the 20 traits analyzed. The majority of quantitative trait loci are specific to one of the two nitrogen treatments, demonstrating significant nitrogen-dependent genetic control. A highly significant genetic correlation was observed between plant growth and lignin/cellulose composition, and quantitative trait loci co-localization identified the genomic position of potential pleiotropic regulators. Pleiotropic loci linking higher growth rates to wood with less lignin are excellent targets to engineer tree germplasm improved for pulp, paper and cellulosic ethanol production. The causative genes are being identified with a genetical genomics approach.
DOI: 10.1111/j.1469-8137.2009.02785.x
PubMed: 19291008
Affiliations:
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Drost</name></author><author><name sortKey="Miles, Brianna L" sort="Miles, Brianna L" uniqKey="Miles B" first="Brianna L" last="Miles">Brianna L. Miles</name></author><author><name sortKey="Boaventura Novaes, Carolina R D" sort="Boaventura Novaes, Carolina R D" uniqKey="Boaventura Novaes C" first="Carolina R D" last="Boaventura-Novaes">Carolina R D. 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Drost</name></author><author><name sortKey="Miles, Brianna L" sort="Miles, Brianna L" uniqKey="Miles B" first="Brianna L" last="Miles">Brianna L. Miles</name></author><author><name sortKey="Boaventura Novaes, Carolina R D" sort="Boaventura Novaes, Carolina R D" uniqKey="Boaventura Novaes C" first="Carolina R D" last="Boaventura-Novaes">Carolina R D. Boaventura-Novaes</name></author><author><name sortKey="Benedict, Catherine" sort="Benedict, Catherine" uniqKey="Benedict C" first="Catherine" last="Benedict">Catherine Benedict</name></author><author><name sortKey="Dervinis, Christopher" sort="Dervinis, Christopher" uniqKey="Dervinis C" first="Christopher" last="Dervinis">Christopher Dervinis</name></author><author><name sortKey="Yu, Qibin" sort="Yu, Qibin" uniqKey="Yu Q" first="Qibin" last="Yu">Qibin Yu</name></author><author><name sortKey="Sykes, Robert" sort="Sykes, Robert" uniqKey="Sykes R" first="Robert" last="Sykes">Robert Sykes</name></author><author><name sortKey="Davis, Mark" sort="Davis, Mark" uniqKey="Davis M" first="Mark" last="Davis">Mark Davis</name></author><author><name sortKey="Martin, Timothy A" sort="Martin, Timothy A" uniqKey="Martin T" first="Timothy A" last="Martin">Timothy A. Martin</name></author><author><name sortKey="Peter, Gary F" sort="Peter, Gary F" uniqKey="Peter G" first="Gary F" last="Peter">Gary F. Peter</name></author><author><name sortKey="Kirst, Matias" sort="Kirst, Matias" uniqKey="Kirst M" first="Matias" last="Kirst">Matias Kirst</name></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biomass (MeSH)</term><term>Clone Cells (MeSH)</term><term>Fertilizers (MeSH)</term><term>Genetic Linkage (MeSH)</term><term>Mass Spectrometry (MeSH)</term><term>Nitrogen (pharmacology)</term><term>Phenotype (MeSH)</term><term>Plant Shoots (growth & development)</term><term>Populus (drug effects)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Quantitative Trait Loci (genetics)</term><term>Quantitative Trait, Heritable (MeSH)</term><term>Reproducibility of Results (MeSH)</term><term>Wood (chemistry)</term><term>Wood (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Azote (pharmacologie)</term><term>Biomasse (MeSH)</term><term>Bois (composition chimique)</term><term>Bois (génétique)</term><term>Caractère quantitatif héréditaire (MeSH)</term><term>Clones cellulaires (MeSH)</term><term>Engrais (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Locus de caractère quantitatif (génétique)</term><term>Phénotype (MeSH)</term><term>Populus (croissance et développement)</term><term>Populus (effets des médicaments et des substances chimiques)</term><term>Populus (génétique)</term><term>Pousses de plante (croissance et développement)</term><term>Reproductibilité des résultats (MeSH)</term><term>Spectrométrie de masse (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Nitrogen</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Fertilizers</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Wood</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Bois</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term><term>Pousses de plante</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term><term>Quantitative Trait Loci</term><term>Wood</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Shoots</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bois</term><term>Locus de caractère quantitatif</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Azote</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biomass</term><term>Clone Cells</term><term>Genetic Linkage</term><term>Mass Spectrometry</term><term>Phenotype</term><term>Quantitative Trait, Heritable</term><term>Reproducibility of Results</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Biomasse</term><term>Caractère quantitatif héréditaire</term><term>Clones cellulaires</term><term>Engrais</term><term>Liaison génétique</term><term>Phénotype</term><term>Reproductibilité des résultats</term><term>Spectrométrie de masse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genetic control of carbon allocation and partitioning in woody perennial plants is poorly understood despite its importance for carbon sequestration, biofuels and other wood-based industries. It is also unclear how environmental cues, such as nitrogen availability, impact the genes that regulate growth, biomass allocation and wood composition in trees. We phenotyped 396 clonally replicated genotypes of an interspecific pseudo-backcross pedigree of Populus for wood composition and biomass traits in above- and below-ground organs. The loci that regulate growth, carbon allocation and partitioning under two nitrogen conditions were identified, defining the contribution of environmental cues to their genetic control. Sixty-three quantitative trait loci were identified for the 20 traits analyzed. The majority of quantitative trait loci are specific to one of the two nitrogen treatments, demonstrating significant nitrogen-dependent genetic control. A highly significant genetic correlation was observed between plant growth and lignin/cellulose composition, and quantitative trait loci co-localization identified the genomic position of potential pleiotropic regulators. Pleiotropic loci linking higher growth rates to wood with less lignin are excellent targets to engineer tree germplasm improved for pulp, paper and cellulosic ethanol production. The causative genes are being identified with a genetical genomics approach.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19291008</PMID><DateCompleted><Year>2011</Year><Month>06</Month><Day>13</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>182</Volume><Issue>4</Issue><PubDate><Year>2009</Year><Month>Jun</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels.</ArticleTitle><Pagination><MedlinePgn>878-90</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1469-8137.2009.02785.x</ELocationID><Abstract><AbstractText>The genetic control of carbon allocation and partitioning in woody perennial plants is poorly understood despite its importance for carbon sequestration, biofuels and other wood-based industries. It is also unclear how environmental cues, such as nitrogen availability, impact the genes that regulate growth, biomass allocation and wood composition in trees. We phenotyped 396 clonally replicated genotypes of an interspecific pseudo-backcross pedigree of Populus for wood composition and biomass traits in above- and below-ground organs. The loci that regulate growth, carbon allocation and partitioning under two nitrogen conditions were identified, defining the contribution of environmental cues to their genetic control. Sixty-three quantitative trait loci were identified for the 20 traits analyzed. The majority of quantitative trait loci are specific to one of the two nitrogen treatments, demonstrating significant nitrogen-dependent genetic control. A highly significant genetic correlation was observed between plant growth and lignin/cellulose composition, and quantitative trait loci co-localization identified the genomic position of potential pleiotropic regulators. Pleiotropic loci linking higher growth rates to wood with less lignin are excellent targets to engineer tree germplasm improved for pulp, paper and cellulosic ethanol production. The causative genes are being identified with a genetical genomics approach.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Novaes</LastName><ForeName>Evandro</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Osorio</LastName><ForeName>Luis</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Drost</LastName><ForeName>Derek R</ForeName><Initials>DR</Initials></Author><Author ValidYN="Y"><LastName>Miles</LastName><ForeName>Brianna L</ForeName><Initials>BL</Initials></Author><Author ValidYN="Y"><LastName>Boaventura-Novaes</LastName><ForeName>Carolina R D</ForeName><Initials>CR</Initials></Author><Author ValidYN="Y"><LastName>Benedict</LastName><ForeName>Catherine</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Dervinis</LastName><ForeName>Christopher</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Qibin</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Sykes</LastName><ForeName>Robert</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Davis</LastName><ForeName>Mark</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Timothy A</ForeName><Initials>TA</Initials></Author><Author ValidYN="Y"><LastName>Peter</LastName><ForeName>Gary F</ForeName><Initials>GF</Initials></Author><Author ValidYN="Y"><LastName>Kirst</LastName><ForeName>Matias</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005308">Fertilizers</NameOfSubstance></Chemical><Chemical><RegistryNumber>N762921K75</RegistryNumber><NameOfSubstance UI="D009584">Nitrogen</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="CommentIn"><RefSource>New Phytol. 2009 Jun;182(4):783-5</RefSource><PMID Version="1">19646065</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="Y">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002999" MajorTopicYN="N">Clone Cells</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005308" MajorTopicYN="N">Fertilizers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013058" MajorTopicYN="N">Mass Spectrometry</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009584" MajorTopicYN="N">Nitrogen</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018520" MajorTopicYN="N">Plant Shoots</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019655" MajorTopicYN="N">Quantitative Trait, Heritable</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2009</Year><Month>3</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2009</Year><Month>3</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>6</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19291008</ArticleId><ArticleId IdType="pii">NPH2785</ArticleId><ArticleId IdType="doi">10.1111/j.1469-8137.2009.02785.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Floride</li></region></list><tree><noCountry><name sortKey="Benedict, Catherine" sort="Benedict, Catherine" uniqKey="Benedict C" first="Catherine" last="Benedict">Catherine Benedict</name><name sortKey="Boaventura Novaes, Carolina R D" sort="Boaventura Novaes, Carolina R D" uniqKey="Boaventura Novaes C" first="Carolina R D" last="Boaventura-Novaes">Carolina R D. Boaventura-Novaes</name><name sortKey="Davis, Mark" sort="Davis, Mark" uniqKey="Davis M" first="Mark" last="Davis">Mark Davis</name><name sortKey="Dervinis, Christopher" sort="Dervinis, Christopher" uniqKey="Dervinis C" first="Christopher" last="Dervinis">Christopher Dervinis</name><name sortKey="Drost, Derek R" sort="Drost, Derek R" uniqKey="Drost D" first="Derek R" last="Drost">Derek R. Drost</name><name sortKey="Kirst, Matias" sort="Kirst, Matias" uniqKey="Kirst M" first="Matias" last="Kirst">Matias Kirst</name><name sortKey="Martin, Timothy A" sort="Martin, Timothy A" uniqKey="Martin T" first="Timothy A" last="Martin">Timothy A. Martin</name><name sortKey="Miles, Brianna L" sort="Miles, Brianna L" uniqKey="Miles B" first="Brianna L" last="Miles">Brianna L. Miles</name><name sortKey="Osorio, Luis" sort="Osorio, Luis" uniqKey="Osorio L" first="Luis" last="Osorio">Luis Osorio</name><name sortKey="Peter, Gary F" sort="Peter, Gary F" uniqKey="Peter G" first="Gary F" last="Peter">Gary F. Peter</name><name sortKey="Sykes, Robert" sort="Sykes, Robert" uniqKey="Sykes R" first="Robert" last="Sykes">Robert Sykes</name><name sortKey="Yu, Qibin" sort="Yu, Qibin" uniqKey="Yu Q" first="Qibin" last="Yu">Qibin Yu</name></noCountry><country name="États-Unis"><region name="Floride"><name sortKey="Novaes, Evandro" sort="Novaes, Evandro" uniqKey="Novaes E" first="Evandro" last="Novaes">Evandro Novaes</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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